Transcript: LINC01089:27

Basic information

LNCipedia transcript ID: LINC01089:27 
LNCipedia gene ID: LINC01089
Location (hg19): chr12:122233172-122238412
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 5052 bp
Exons: 2
Sources: Sun and Gadad et al., 2015
Alternative transcript names: LncRNA1576:1
Alternative gene names: ; LIMT


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -23.1034 non-coding 
CPAT coding probability 82.85% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC01089:27 yes no no no

Available literature

  1. Sas-Chen (2016), LIMT is a novel metastasis inhibiting lncRNA suppressed by EGF and downregulated in aggressive breast cancer., EMBO Mol Med
  2. Ragusa (2015), Non-coding landscapes of colorectal cancer., World J. Gastroenterol.
  3. Zhi (2015), The Use of Three Long Non-Coding RNAs as Potential Prognostic Indicators of Astrocytoma., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 LINC01089:27
4.1 LINC01089:27
5.0 LINC01089:27
5.1 LINC01089:27
5.2 LINC01089:27