Transcript: LINC01096:2

Basic information

LNCipedia transcript ID: LINC01096:2 
LNCipedia gene ID: LINC01096
RefSeq ID: NR_015450
Location (hg19): chr4:13547700-13549448
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1749 bp
Exons: 1
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT095576; NR_015450; NR_015450.1
Alternative gene names: ; LINC01096


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -59.6023 non-coding 
CPAT coding probability 33.60% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01096:2 no no no no

Available literature

  1. Shen (2015), Identification of novel long non-coding RNAs in triple-negative breast cancer., Oncotarget
  2. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NKX3-2-1:4
4.0 LINC01096:2
4.1 LINC01096:2
5.0 LINC01096:2
5.1 LINC01096:2
5.2 LINC01096:2