Transcript: LINC01096:4

Basic information

LNCipedia transcript ID: LINC01096:4 
HGNC Gene Symbol: LINC01096    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1096
Ensembl Gene ID: ENSG00000246095
Ensembl Transcript ID: ENST00000503938
Location (hg19): chr4:13547699-13548588
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 366 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000503938; ENST00000503938.1; AC006445.8-002; OTTHUMT00000359165.1; NONHSAT095575
Alternative gene names: ENSG00000246095; AC006445.8; ENSG00000246095.2; OTTHUMG00000160090.1; LINC01096;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -191.9312 non-coding 
CPAT coding probability 1.53% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01096:4 no no no no

Available literature

  1. Shen (2015), Identification of novel long non-coding RNAs in triple-negative breast cancer., Oncotarget
  2. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NKX3-2-1:2
3.1 lnc-NKX3-2-1:2
4.0 LINC01096:4
4.1 LINC01096:4
5.0 LINC01096:4
5.1 LINC01096:4
5.2 LINC01096:4