Transcript: LINC01096:6

Basic information

LNCipedia transcript ID: LINC01096:6 
LNCipedia gene ID: LINC01096
Location (hg19): chr4:13547432-13549335
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 639 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000246095.2|HBMT00001080534.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -165.2339 non-coding 
CPAT coding probability 0.72% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01096:6 no no no no

Available literature

  1. Shen (2015), Identification of novel long non-coding RNAs in triple-negative breast cancer., Oncotarget
  2. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 LINC01096:6
5.0 LINC01096:6
5.1 LINC01096:6
5.2 LINC01096:6