Transcript: LINC01105:12

Basic information

LNCipedia transcript ID: LINC01105:12 
LNCipedia gene ID: LINC01105
RefSeq ID: NR_026833
Location (hg19): chr2:6122110-6128364
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3463 bp
Exons: 3
Sources: Broad Institute; NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00002638; NONHSAT068834; NR_026833; NR_026833.1
Alternative gene names: XLOC_001327; linc-RSAD2-2; FLJ30594; LOC150622; LOC400940


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -0.3531 non-coding 
CPAT coding probability 18.13% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01105:12 no no no no

Available literature

  1. Tang (2016), MEG3, HCN3 and linc01105 influence the proliferation and apoptosis of neuroblastoma cells via the HIF-1α and p53 pathways., Sci Rep
  2. Di Salvo (2015), Right ventricular long noncoding RNA expression in human heart failure., Pulm Circ
  3. Cogill (2014), Co-expression Network Analysis of Human lncRNAs and Cancer Genes., Cancer Inform


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SOX11-2:8
3.1 lnc-SOX11-3:9
4.0 LINC01105:12
4.1 LINC01105:12
5.0 LINC01105:12
5.1 LINC01105:12
5.2 LINC01105:12