Transcript: LINC01108:2

Basic information

LNCipedia transcript ID: LINC01108:2 
LNCipedia gene ID: LINC01108
RefSeq ID: NR_108096
Location (hg19): chr6:14280358-14285685
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3697 bp
Exons: 3
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_108096; NR_108096.1
Alternative gene names: LncRNA-ES1; LINC01108


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -45.8488 non-coding 
CPAT coding probability 4.13% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01108:2 no no no no

Available literature

  1. Ye (2017), Intergenic variants may predispose to major depression disorder through regulation of long non-coding RNA expression., Gene
  2. Kapusta (2013), Transposable elements are major contributors to the origin, diversification, and regulation of vertebrate long noncoding RNAs., PLoS Genet.
  3. Ng (2012), Human long non-coding RNAs promote pluripotency and neuronal differentiation by association with chromatin modifiers and transcription factors., EMBO J.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CCDC90A-2:4
4.0 LINC01108:2
4.1 LINC01108:2
5.0 LINC01108:2
5.1 LINC01108:2
5.2 LINC01108:2