Transcript: LINC01115:5

Basic information

LNCipedia transcript ID: LINC01115:5 
LNCipedia gene ID: LINC01115
Location (hg19): chr2:780347-863877
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 537 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00002734; NONHSAT068616
Alternative gene names: XLOC_001936; linc-TMEM18-10;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -22.2856 non-coding 
CPAT coding probability 39.73% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC01115:5 no no no no

Available literature

  1. De (2015), Characterizing gene-gene interactions in a statistical epistasis network of twelve candidate genes for obesity., BioData Min


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TMEM18-9:3
3.1 lnc-TMEM18-9:4
4.0 LINC01115:5
4.1 LINC01115:5
5.0 LINC01115:5
5.1 LINC01115:5
5.2 LINC01115:5