Transcript: LINC01116:19

Basic information

LNCipedia transcript ID: LINC01116:19 
LNCipedia gene ID: LINC01116
Ensembl Gene ID: ENSG00000272551
Ensembl Transcript ID: ENST00000608775
Location (hg19): chr2:177476165-177476977
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 813 bp
Exons: 1
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000608775.1
Alternative gene names: ENSG00000272551.1; RP11-324L17.1; TALNEC2; AC017048.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -226.4171 non-coding 
CPAT coding probability 0.23% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01116:19 no no no no

Available literature

  1. Beaver (2017), Long noncoding RNAs and sulforaphane: a target for chemoprevention and suppression of prostate cancer., J. Nutr. Biochem.
  2. Brodie (2017), The novel long non-coding RNA TALNEC2, regulates tumor cell growth and the stemness and radiation response of glioma stem cells., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC009336.1-13:1
4.0 lnc-AC009336.1-13:1
4.1 LINC01116:19
5.0 LINC01116:19
5.1 LINC01116:19
5.2 LINC01116:19