Transcript: LINC01116:2

Basic information

LNCipedia transcript ID: LINC01116:2 
HGNC Gene Symbol: LINC01116    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1116
Ensembl Gene ID: ENSG00000163364
Ensembl Transcript ID: ENST00000295549
Location (hg19): chr2:177494317-177502659
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1407 bp
Exons: 3
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT075659; ENST00000295549.4; ENST00000295549.8
Alternative gene names: ENSG00000163364.5; LINC01116; ENSG00000163364.9; ; TALNEC2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 1 coding 
Peptide Confidence Reading frame
NRNANLPAR 90.9090909090909% sense-2
Lee translation initiation sites 0 non-coding 
PhyloCSF score -132.2797 non-coding 
CPAT coding probability 3.67% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC01116:2 no no no no

Available literature

  1. Beaver (2017), Long noncoding RNAs and sulforaphane: a target for chemoprevention and suppression of prostate cancer., J. Nutr. Biochem.
  2. Brodie (2017), The novel long non-coding RNA TALNEC2, regulates tumor cell growth and the stemness and radiation response of glioma stem cells., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC009336.1-5:6
4.0 LINC01116:2
4.1 LINC01116:2
5.0 LINC01116:2
5.1 LINC01116:2
5.2 LINC01116:2