Transcript: LINC01117:1

Basic information

LNCipedia transcript ID: LINC01117:1 
LNCipedia gene ID: LINC01117
Location (hg19): chr2:177465229-177539076
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2197 bp
Exons: 7
Sources: Nielsen et al.,2014
Alternative transcript names: l_1997_chr2:177465228-177521692_thyroid
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 3.4227 non-coding 
CPAT coding probability 11.57% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01117:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MTX2-1:5
4.0 LINC01117:1
4.1 LINC01117:1
5.0 LINC01117:1
5.1 LINC01117:1
5.2 LINC01117:1