Transcript: LINC01117:7

Basic information

LNCipedia transcript ID: LINC01117:7 
LNCipedia gene ID: LINC01117
Location (hg19): chr2:177503822-177520492
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 604 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00003947; NONHSAT075668
Alternative gene names: XLOC_001765; linc-HNRNPA3-4;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -228.5371 non-coding 
CPAT coding probability 0.17% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01117:7 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MTX2-1:3
3.1 lnc-MTX2-1:3
4.0 LINC01117:7
4.1 LINC01117:7
5.0 LINC01117:7
5.1 LINC01117:7
5.2 LINC01117:7