Transcript: LINC01122:10

Basic information

LNCipedia transcript ID: LINC01122:10 
LNCipedia gene ID: LINC01122
RefSeq ID: NR_033873
Location (hg19): chr2:58747888-59290901
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 4296 bp
Exons: 14
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT070864; NR_033873; NR_033873.1
Alternative gene names: FLJ30838; LINC01122


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 4.7913 non-coding 
CPAT coding probability 2.66% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01122:10 no no no no

Available literature

  1. Hezroni (2015), Principles of long noncoding RNA evolution derived from direct comparison of transcriptomes in 17 species., Cell Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-VRK2-5:12
4.0 LINC01122:10
4.1 LINC01122:10
5.0 LINC01122:10
5.1 LINC01122:10
5.2 LINC01122:10