Transcript: LINC01122:2

Basic information

LNCipedia transcript ID: LINC01122:2 
LNCipedia gene ID: LINC01122
Location (hg19): chr2:58655168-58923190
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 651 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000455219; ENST00000455219.2; AC007092.1-006; OTTHUMT00000327007.2; NONHSAT070857
Alternative gene names: ENSG00000233723; AC007092.1; ENSG00000233723.2; OTTHUMG00000152613.3; FLJ30838


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -188.9333 non-coding 
CPAT coding probability 0.98% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01122:2 no no no no

Available literature

  1. Hezroni (2015), Principles of long noncoding RNA evolution derived from direct comparison of transcriptomes in 17 species., Cell Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-VRK2-5:2
3.1 lnc-VRK2-5:2
4.0 LINC01122:2
4.1 LINC01122:2
5.0 LINC01122:2
5.1 LINC01122:2
5.2 LINC01122:2