Transcript: LINC01122:8

Basic information

LNCipedia transcript ID: LINC01122:8 
HGNC Gene Symbol: LINC01122    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1122
Ensembl Gene ID: ENSG00000233723
Ensembl Transcript ID: ENST00000455219
Location (hg19): chr2:58655520-58923190
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 564 bp
Exons: 3
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT147091; ENST00000455219.3; ENST00000455219.7
Alternative gene names: ENSG00000233723.3; LINC01122; ENSG00000233723.7; FLJ30838


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -188.9333 non-coding 
CPAT coding probability 0.98% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01122:8 no no no no

Available literature

  1. Hezroni (2015), Principles of long noncoding RNA evolution derived from direct comparison of transcriptomes in 17 species., Cell Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-VRK2-5:11
4.0 LINC01122:8
4.1 LINC01122:8
5.0 LINC01122:8
5.1 LINC01122:8
5.2 LINC01122:8