Transcript: LINC01124:18

Basic information

LNCipedia transcript ID: LINC01124:18 
LNCipedia gene ID: LINC01124
Ensembl Gene ID: ENSG00000213981
Ensembl Transcript ID: ENST00000428156
Location (hg19): chr2:171496884-171551884
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2189 bp
Exons: 10
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000428156; ENST00000428156.1; AC007277.3-001; OTTHUMT00000333674.1; NONHSAT075414
Alternative gene names: ENSG00000213981; AC007277.3; ENSG00000213981.3; OTTHUMG00000154056.1; ENSG00000213981.4; ENSG00000213981.8; ; AC007277.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 8.4296 non-coding 
CPAT coding probability 80.29% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC01124:18 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AC007405.2.1-2:1
3.1 lnc-AC007405.2.1-2:1
4.0 lnc-AC007405.2.1-2:1
4.1 LINC01124:18
5.0 LINC01124:18
5.1 LINC01124:18
5.2 LINC01124:18