Transcript: LINC01133:10

Basic information

LNCipedia transcript ID: LINC01133:10 
LNCipedia gene ID: LINC01133
Location (hg19): chr1:159931047-159948851
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1080 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000224259.1|ENST00000423943.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -178.7701 non-coding 
CPAT coding probability 1.26% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01133:10 no no no no

Available literature

  1. Wu (2017), LncRNA-PAGBC acts as a microRNA sponge and promotes gallbladder tumorigenesis., EMBO Rep.
  2. Zeng (2017), Long Noncoding RNA LINC01133 Sponges miR-422a to Aggravate the Tumorigenesis of Human Osteosarcoma., Oncol. Res.
  3. Ragusa (2015), Non-coding landscapes of colorectal cancer., World J. Gastroenterol.
  4. Zhang (2015), A novel long noncoding RNA LINC01133 is upregulated in lung squamous cell cancer and predicts survival., Tumour Biol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 LINC01133:10
5.0 LINC01133:10
5.1 LINC01133:10
5.2 LINC01133:10