Transcript: LINC01133:2

Basic information

LNCipedia transcript ID: LINC01133:2 
LNCipedia gene ID: LINC01133
Location (hg19): chr1:159931008-159946902
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 804 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000443364; ENST00000443364.1; RP11-48O20.4-002; OTTHUMT00000060639.1; NONHSAT007032
Alternative gene names: ENSG00000224259; RP11-48O20.4; ENSG00000224259.1; OTTHUMG00000024077.1; LINC01133;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -35.6785 non-coding 
CPAT coding probability 4.08% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01133:2 no no no no

Available literature

  1. Wu (2017), LncRNA-PAGBC acts as a microRNA sponge and promotes gallbladder tumorigenesis., EMBO Rep.
  2. Zeng (2017), Long Noncoding RNA LINC01133 Sponges miR-422a to Aggravate the Tumorigenesis of Human Osteosarcoma., Oncol. Res.
  3. Ragusa (2015), Non-coding landscapes of colorectal cancer., World J. Gastroenterol.
  4. Zhang (2015), A novel long noncoding RNA LINC01133 is upregulated in lung squamous cell cancer and predicts survival., Tumour Biol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-KCNJ9-1:1
3.1 lnc-KCNJ9-2:1
4.0 LINC01133:2
4.1 LINC01133:2
5.0 LINC01133:2
5.1 LINC01133:2
5.2 LINC01133:2