Transcript: LINC01137:3

Basic information

LNCipedia transcript ID: LINC01137:3 
HGNC Gene Symbol: LINC01137    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1137
Ensembl Gene ID: ENSG00000233621
Ensembl Transcript ID: ENST00000424989
Location (hg19): chr1:37920480-37940012
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 1395 bp
Exons: 3
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00000504; ENST00000424989.1; RP11-422J8.1-001; OTTHUMT00000012168.1
Alternative gene names: XLOC_000787; linc-GRIK3-2; ENSG00000233621.1; RP11-422J8.1; OTTHUMG00000004224.1; LINC01137; LOC728431


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -128.8916 non-coding 
CPAT coding probability 3.57% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01137:3 no no no no

Available literature

  1. Sakurai (2015), The lncRNA DRAIC/PCAT29 Locus Constitutes a Tumor-Suppressive Nexus., Mol. Cancer Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MEAF6-1:1
3.1 lnc-MEAF6-1:1
4.0 LINC01137:3
4.1 LINC01137:3
5.0 LINC01137:3
5.1 LINC01137:3
5.2 LINC01137:3