Transcript: LINC01138:38

Basic information

LNCipedia transcript ID: LINC01138:38 
LNCipedia gene ID: LINC01138
Location (hg19): chr1:143719663-143721171
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 420 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000442423; ENST00000442423.1; BX284650.3-001; OTTHUMT00000037967.1; NONHSAT005753
Alternative gene names: ENSG00000226637; BX284650.3; ENSG00000226637.1; OTTHUMG00000013627.1; RP6-206I17.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 0.8435 non-coding 
CPAT coding probability 0.45% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01138:38 no no no no

Available literature

  1. Wan (2016), Identification of androgen-responsive lncRNAs as diagnostic and prognostic markers for prostate cancer., Oncotarget
  2. Cao (2013), Analysis of long non-coding RNA expression profiles in gastric cancer., World J. Gastroenterol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PPIAL4G-1:1
3.1 lnc-PPIAL4G-1:1
4.0 lnc-PPIAL4G-2:13
4.1 lnc-PPIAL4G-2:13
5.0 lnc-PPIAL4G-2:13
5.1 LINC01138:27
5.2 LINC01138:38