Transcript: LINC01138:45

Basic information

LNCipedia transcript ID: LINC01138:45 
LNCipedia gene ID: LINC01138
Location (hg19): chr1:147763012-147768120
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 663 bp
Exons: 2
Sources: NONCODE v4
Alternative transcript names: NONHSAT006088
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 29.9336 non-coding 
CPAT coding probability 7.90% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01138:45 no no no no

Available literature

  1. Wan (2016), Identification of androgen-responsive lncRNAs as diagnostic and prognostic markers for prostate cancer., Oncotarget
  2. Cao (2013), Analysis of long non-coding RNA expression profiles in gastric cancer., World J. Gastroenterol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NBPF24-4:5
4.0 lnc-NBPF24-4:5
4.1 lnc-NBPF24-4:5
5.0 lnc-NBPF24-4:5
5.1 LINC01138:35
5.2 LINC01138:45