Transcript: LINC01140:13

Basic information

LNCipedia transcript ID: LINC01140:13 
HGNC Gene Symbol: LINC01140    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1140
Ensembl Gene ID: ENSG00000267272
Ensembl Transcript ID: ENST00000619924
Location (hg19): chr1:87597685-87598718
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1034 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000619924.1
Alternative gene names: ENSG00000267272.5; LINC01140; FLJ41676


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -447.2264 non-coding 
CPAT coding probability 96.25% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC01140:13 yes no no no

Available literature

  1. Song (2017), A three-lncRNA expression signature associated with the prognosis of gastric cancer patients., Cancer Med
  2. Gu (2015), Aberrant expression of long noncoding RNAs in chronic thromboembolic pulmonary hypertension., Mol Med Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 LINC01140:13
4.1 LINC01140:13
5.0 LINC01140:13
5.1 LINC01140:13
5.2 LINC01140:13