Transcript: LINC01152:3

Basic information

LNCipedia transcript ID: LINC01152:3 
HGNC Gene Symbol: LINC01152    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1152
Ensembl Gene ID: ENSG00000256124
Ensembl Transcript ID: ENST00000538810
Location (hg19): chr17:70026795-70034889
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 519 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000538810; ENST00000538810.1; RP11-84E24.3-002; OTTHUMT00000397675.1; NONHSAT055641; ENST00000538810.5
Alternative gene names: ENSG00000256124; RP11-84E24.3; ENSG00000256124.1; OTTHUMG00000168039.1; LINC01152; ENSG00000256124.5; TCONS_00025128; CMPD


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -83.672 non-coding 
CPAT coding probability 0.25% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01152:3 no no no no

Available literature

  1. Barter (2017), The long non-coding RNA <i>ROCR</i> contributes to SOX9 expression and chondrogenic differentiation of human mesenchymal stem cells., Development
  2. Ninomiya (1996), Isolation of a testis-specific cDNA on chromosome 17q from a region adjacent to the breakpoint of t(12;17) observed in a patient with acampomelic campomelic dysplasia and sex reversal., Hum. Mol. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SOX9-2:2
3.1 lnc-SOX9-2:2
4.0 LINC01152:3
4.1 LINC01152:3
5.0 LINC01152:3
5.1 LINC01152:3
5.2 LINC01152:3