Transcript: LINC01152:5

Basic information

LNCipedia transcript ID: LINC01152:5 
HGNC Gene Symbol: LINC01152    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1152
Ensembl Gene ID: ENSG00000256124
Ensembl Transcript ID: ENST00000472655
RefSeq ID: NR_110124
Location (hg19): chr17:70026795-70037438
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3578 bp
Exons: 3
Sources: Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_110124; ENST00000472655.3; NR_110124.1
Alternative gene names: ENSG00000256124.5; LINC01152; TCONS_00025128; CMPD


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -38.4679 non-coding 
CPAT coding probability 2.86% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01152:5 no no no no

Available literature

  1. Barter (2017), The long non-coding RNA <i>ROCR</i> contributes to SOX9 expression and chondrogenic differentiation of human mesenchymal stem cells., Development
  2. Ninomiya (1996), Isolation of a testis-specific cDNA on chromosome 17q from a region adjacent to the breakpoint of t(12;17) observed in a patient with acampomelic campomelic dysplasia and sex reversal., Hum. Mol. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SOX9-2:5
4.0 LINC01152:5
4.1 LINC01152:5
5.0 LINC01152:5
5.1 LINC01152:5
5.2 LINC01152:5