Transcript: LINC01154:2

Basic information

LNCipedia transcript ID: LINC01154:2 
LNCipedia gene ID: LINC01154
RefSeq ID: NR_120487
Location (hg19): chr12:54747475-54860814
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 575 bp
Exons: 4
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_120487; NR_120487.1
Alternative gene names: ; LOC102724050


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -93.8426 non-coding 
CPAT coding probability 1.16% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01154:2 no no no no

Available literature

  1. Nielsen (2014), Identification of expressed and conserved human noncoding RNAs., RNA


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NCKAP1L-1:7
4.0 LINC01154:2
4.1 LINC01154:2
5.0 LINC01154:2
5.1 LINC01154:2
5.2 LINC01154:2