Transcript: LINC01162:2

Basic information

LNCipedia transcript ID: LINC01162:2 
HGNC Gene Symbol: LINC01162    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1162
Ensembl Gene ID: ENSG00000232790
Ensembl Transcript ID: ENST00000447262
RefSeq ID: NR_126381
Location (hg19): chr7:20875050-21062767
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 447 bp
Exons: 6
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT119437; ENST00000447262.2; NR_126381.1
Alternative gene names: ENSG00000232790.2; LINC01162;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -169.0204 non-coding 
CPAT coding probability 0.15% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01162:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ABCB5-1:2
4.0 LINC01162:2
4.1 LINC01162:2
5.0 LINC01162:2
5.1 LINC01162:2
5.2 LINC01162:2