Transcript: LINC01170:2

Basic information

LNCipedia transcript ID: LINC01170:2 
LNCipedia gene ID: LINC01170
Location (hg19): chr5:123649342-123740772
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 285 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000519703; ENST00000519703.1; RP11-93O7.5-002; OTTHUMT00000374576.1; NONHSAT103516
Alternative gene names: ENSG00000253807; RP11-93O7.5; ENSG00000253807.1; OTTHUMG00000163624.1; LINC01170;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -72.5534 non-coding 
CPAT coding probability 0.56% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01170:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ZNF608-7:1
3.1 lnc-ZNF608-7:1
4.0 LINC01170:2
4.1 LINC01170:2
5.0 LINC01170:2
5.1 LINC01170:2
5.2 LINC01170:2