Transcript: LINC01170:3

Basic information

LNCipedia transcript ID: LINC01170:3 
HGNC Gene Symbol: LINC01170    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1170
Ensembl Gene ID: ENSG00000253807
Ensembl Transcript ID: ENST00000519703
Location (hg19): chr5:123641923-123740772
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 406 bp
Exons: 5
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000519703.2
Alternative gene names: ENSG00000253807.5; LINC01170;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -72.5534 non-coding 
CPAT coding probability 0.56% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01170:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 LINC01170:3
4.1 LINC01170:3
5.0 LINC01170:3
5.1 LINC01170:3
5.2 LINC01170:3