Transcript: LINC01176:16

Basic information

LNCipedia transcript ID: LINC01176:16 
HGNC Gene Symbol: LINC01176    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1176
Ensembl Gene ID: ENSG00000281404
Ensembl Transcript ID: ENST00000628121
RefSeq ID: NR_108081
Location (hg19): chr7:30430501-30443671
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 716 bp
Exons: 3
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000628121.1; NR_108081.1
Alternative gene names: ENSG00000281404.1; LINC01176


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 1.9823 non-coding 
CPAT coding probability 9.73% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01176:16 no no no no

Available literature

  1. Yang (2015), Microarray profiling of long non-coding RNA (lncRNA) associated with hypertrophic cardiomyopathy., BMC Cardiovasc Disord


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-ZNRF2-4:6
4.1 lnc-ZNRF2-4:6
5.0 lnc-ZNRF2-4:6
5.1 LINC01176:7
5.2 LINC01176:16