Transcript: LINC01180:1

Basic information

LNCipedia transcript ID: LINC01180:1 
HGNC Gene Symbol: LINC01180    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1180
Ensembl Gene ID: ENSG00000266979
Ensembl Transcript ID: ENST00000589259
RefSeq ID: NR_110661
Location (hg19): chr17:42723732-42727717
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2025 bp
Exons: 3
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT053958; ENST00000589259.1; NR_110661; NR_110661.1
Alternative gene names: ENSG00000266979.1; RP11-1072C15.2; LINC01180;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -11.8743 non-coding 
CPAT coding probability 0.51% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01180:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CCDC43-1:2
4.0 LINC01180:1
4.1 LINC01180:1
5.0 LINC01180:1
5.1 LINC01180:1
5.2 LINC01180:1