Transcript: LINC01180:2

Basic information

LNCipedia transcript ID: LINC01180:2 
LNCipedia gene ID: LINC01180
Location (hg19): chr17:42723425-42725050
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1046 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00025662; NONHSAT053957
Alternative gene names: XLOC_012488; linc-GPATCH8;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 4.8901 non-coding 
CPAT coding probability 3.07% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01180:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CCDC43-1:1
3.1 lnc-CCDC43-1:1
4.0 LINC01180:2
4.1 LINC01180:2
5.0 LINC01180:2
5.1 LINC01180:2
5.2 LINC01180:2