Transcript: LINC01182:2

Basic information

LNCipedia transcript ID: LINC01182:2 
HGNC Gene Symbol: LINC01182    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1182
Ensembl Gene ID: ENSG00000250634
Ensembl Transcript ID: ENST00000503532
Location (hg19): chr4:13821734-13978699
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 582 bp
Exons: 5
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00007480; ENST00000503532; ENST00000503532.1; RP11-341G5.1-001; OTTHUMT00000359240.1; NONHSAT095585
Alternative gene names: XLOC_003462; linc-CPEB2-5; ENSG00000250634; RP11-341G5.1; ENSG00000250634.1; OTTHUMG00000160104.2; ENSG00000250634.5; LINC01182;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 1 coding 
Peptide Confidence Reading frame
RGMGAGELSRK 100% sense-2
Lee translation initiation sites 0 non-coding 
PhyloCSF score -126.857 non-coding 
CPAT coding probability 19.34% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC01182:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CPEB2-5:2
3.1 lnc-CPEB2-6:2
4.0 LINC01182:2
4.1 LINC01182:2
5.0 LINC01182:2
5.1 LINC01182:2
5.2 LINC01182:2