Transcript: LINC01186:6

Basic information

LNCipedia transcript ID: LINC01186:6 
LNCipedia gene ID: LINC01186
Location (hg19): chrX:46185714-46187080
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 271 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00016948
Alternative gene names: XLOC_008151; linc-CXorf36-3;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -336.0395 non-coding 
CPAT coding probability 1.64% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01186:6 no no no no

Available literature

  1. Hao (2017), Long noncoding RNA LINC01186, regulated by TGF-β/SMAD3, inhibits migration and invasion through Epithelial-Mesenchymal-Transition in lung cancer., Gene
  2. Gao (2014), Differential expression of long noncoding RNA in primary and recurrent nasopharyngeal carcinoma., Biomed Res Int


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ZNF674-1:4
3.1 lnc-ZNF674-1:5
4.0 LINC01186:6
4.1 LINC01186:6
5.0 LINC01186:6
5.1 LINC01186:6
5.2 LINC01186:6