Transcript: LINC01192:6

Basic information

LNCipedia transcript ID: LINC01192:6 
HGNC Gene Symbol: LINC01192    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1192
Ensembl Gene ID: ENSG00000241369
Ensembl Transcript ID: ENST00000494897
Location (hg19): chr3:162917363-163021076
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 736 bp
Exons: 7
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000494897; ENST00000494897.1; RP11-10O22.2-007; OTTHUMT00000350015.1; NONHSAT093033; ENST00000494897.5
Alternative gene names: ENSG00000241369; RP11-10O22.2; ENSG00000241369.1; OTTHUMG00000158021.3; CT64; ENSG00000241369.5; LINC01192;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 8.3569 non-coding 
CPAT coding probability 0.94% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01192:6 no no no no

Available literature

  1. Chen (2005), Identification of cancer/testis-antigen genes by massively parallel signature sequencing., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SI-4:6
3.1 lnc-SI-4:6
4.0 LINC01192:6
4.1 LINC01192:6
5.0 LINC01192:6
5.1 LINC01192:6
5.2 LINC01192:6