Transcript: LINC01193:5

Basic information

LNCipedia transcript ID: LINC01193:5 
HGNC Gene Symbol: LINC01193    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1193
Ensembl Gene ID: ENSG00000258710
Ensembl Transcript ID: ENST00000557312
Location (hg19): chr15:21184376-21196817
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 537 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000557312.1; RP11-810K23.3-004; OTTHUMT00000414843.2; NONHSAT040677; ENST00000557312.5
Alternative gene names: ENSG00000258710.3; RP11-810K23.3; OTTHUMG00000171709.3; CT60; ENSG00000258710.7; LINC01193; LOC348120


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -14.6461 non-coding 
CPAT coding probability 25.17% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01193:5 no no no no

Available literature

  1. Chen (2005), Identification of cancer/testis-antigen genes by massively parallel signature sequencing., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-OR4M2-3:3
4.0 LINC01193:5
4.1 LINC01193:5
5.0 LINC01193:5
5.1 LINC01193:5
5.2 LINC01193:5