Transcript: LINC01194:3

Basic information

LNCipedia transcript ID: LINC01194:3 
HGNC Gene Symbol: LINC01194    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1194
Ensembl Gene ID: ENSG00000248131
Ensembl Transcript ID: ENST00000505196
Location (hg19): chr5:12574969-12804475
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 540 bp
Exons: 4
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000505196; ENST00000505196.1; RP11-308B16.1-003; OTTHUMT00000366010.1; NONHSAT100513
Alternative gene names: ENSG00000248131; RP11-308B16.1; ENSG00000248131.1; OTTHUMG00000161760.1; CT49; ENSG00000248131.5; LINC01194; TAG


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -29.4644 non-coding 
CPAT coding probability 4.75% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01194:3 no no no no

Available literature

  1. Hogan (2004), Identification of novel and widely expressed cancer/testis gene isoforms that elicit spontaneous cytotoxic T-lymphocyte reactivity to melanoma., Cancer Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TRIO-3:3
3.1 lnc-TRIO-4:2
4.0 LINC01194:3
4.1 LINC01194:3
5.0 LINC01194:3
5.1 LINC01194:3
5.2 LINC01194:3