Transcript: LINC01202:7

Basic information

LNCipedia transcript ID: LINC01202:7 
LNCipedia gene ID: LINC01202
Location (hg19): chr5:161336738-161428237
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1214 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00010539; NONHSAT104879
Alternative gene names: XLOC_005067; linc-GABRB2-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -181.2212 non-coding 
CPAT coding probability 0.35% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01202:7 yes no no no

Available literature

  1. Necsulea (2014), The evolution of lncRNA repertoires and expression patterns in tetrapods., Nature


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GABRB2-1:1
3.1 lnc-GABRB2-2:1
4.0 lnc-GABRB2-2:1
4.1 lnc-GABRB2-2:1
5.0 lnc-GABRB2-2:1
5.1 LINC01202:2
5.2 LINC01202:7