Transcript: LINC01202:9

Basic information

LNCipedia transcript ID: LINC01202:9 
HGNC Gene Symbol: LINC01202    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1202
Ensembl Gene ID: ENSG00000280776
Ensembl Transcript ID: ENST00000625268
Location (hg19): chr5:161337258-161428202
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 907 bp
Exons: 3
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000625268.1
Alternative gene names: ENSG00000280776.1; LINC01202; AC021079.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -181.2212 non-coding 
CPAT coding probability 0.36% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01202:9 yes no no no

Available literature

  1. Necsulea (2014), The evolution of lncRNA repertoires and expression patterns in tetrapods., Nature


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-GABRB2-2:5
4.1 lnc-GABRB2-2:5
5.0 lnc-GABRB2-2:5
5.1 LINC01202:4
5.2 LINC01202:9