Transcript: LINC01215:4

Basic information

LNCipedia transcript ID: LINC01215:4 
LNCipedia gene ID: LINC01215
Location (hg19): chr3:107853894-107857879
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3023 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00006148; NONHSAT091079
Alternative gene names: XLOC_002749; linc-HHLA2-2;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -3.7113 non-coding 
CPAT coding probability 8.19% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01215:4 no no no no

Available literature

  1. Li (2015), Construction and analysis of lncRNA-lncRNA synergistic networks to reveal clinically relevant lncRNAs in cancer., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-HHLA2-1:1
3.1 lnc-HHLA2-1:1
4.0 LINC01215:4
4.1 LINC01215:4
5.0 LINC01215:4
5.1 LINC01215:4
5.2 LINC01215:4