Transcript: LINC01217:1

Basic information

LNCipedia transcript ID: LINC01217:1 
HGNC Gene Symbol: LINC01217    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1217
Ensembl Gene ID: ENSG00000251219
Ensembl Transcript ID: ENST00000514427
Location (hg19): chr4:101699739-101712392
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 562 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00007799; ENST00000514427.1; EMCN-IT2-001; OTTHUMT00000365988.1; NONHSAT097566
Alternative gene names: XLOC_004025; linc-EMCN-3; ENSG00000251219.1; EMCN-IT2; OTTHUMG00000161750.1; LINC01217;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 21.0699 non-coding 
CPAT coding probability 4.34% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01217:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PPP3CA-2:1
3.1 lnc-PPP3CA-2:1
4.0 LINC01217:1
4.1 LINC01217:1
5.0 LINC01217:1
5.1 LINC01217:1
5.2 LINC01217:1