Transcript: LINC01230:13

Basic information

LNCipedia transcript ID: LINC01230:13 
LNCipedia gene ID: LINC01230
Location (hg19): chr9:1046079-1048630
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1916 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011
Alternative transcript names: TCONS_00015639; ENST00000500181
Alternative gene names: XLOC_007262; linc-DMRT2; ENSG00000247223; AL358976.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -181.5961 non-coding 
CPAT coding probability 5.03% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01230:13 no no no no

Available literature

  1. Liu (2014), Tissue-specific RNA-Seq in human evoked inflammation identifies blood and adipose LincRNA signatures of cardiometabolic diseases., Arterioscler. Thromb. Vasc. Biol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-DMRT2-1:3
3.1 lnc-DMRT2-1:3
4.0 lnc-DMRT2-1:3
4.1 lnc-DMRT2-1:3
5.0 lnc-DMRT2-1:3
5.1 LINC01230:5
5.2 LINC01230:13