Transcript: LINC01231:1

Basic information

LNCipedia transcript ID: LINC01231:1 
HGNC Gene Symbol: LINC01231    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1231
Ensembl Gene ID: ENSG00000236511
Ensembl Transcript ID: ENST00000452746
Location (hg19): chr9:3181589-3198517
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 886 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00015641; ENST00000452746; ENST00000452746.1; RP11-32F11.2-001; OTTHUMT00000051538.1; NONHSAT147669
Alternative gene names: XLOC_007268; linc-SLC1A1-3; ENSG00000236511; RP11-32F11.2; ENSG00000236511.1; OTTHUMG00000019454.1; LINC01231;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -110.4106 non-coding 
CPAT coding probability 0.11% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01231:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-KCNV2-2:1
3.1 lnc-KCNV2-2:1
4.0 LINC01231:1
4.1 LINC01231:1
5.0 LINC01231:1
5.1 LINC01231:1
5.2 LINC01231:1