Transcript: LINC01233:3

Basic information

LNCipedia transcript ID: LINC01233:3 
LNCipedia gene ID: LINC01233
Location (hg19): chr19:22715448-22716359
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 611 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00026956; NONHSAT063796
Alternative gene names: XLOC_013014; linc-ZNF492-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 39.2032 non-coding 
CPAT coding probability 5.82% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01233:3 no no no no

Available literature

  1. Li (2014), LncRNA profile study reveals a three-lncRNA signature associated with the survival of patients with oesophageal squamous cell carcinoma., Gut


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ZNF492-1:1
3.1 lnc-ZNF492-1:1
4.0 LINC01233:3
4.1 LINC01233:3
5.0 LINC01233:3
5.1 LINC01233:3
5.2 LINC01233:3