Transcript: LINC01248:10

Basic information

LNCipedia transcript ID: LINC01248:10 
LNCipedia gene ID: LINC01248
Ensembl Gene ID: ENSG00000230090
Ensembl Transcript ID: ENST00000420221
Location (hg19): chr2:5817274-5831178
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 243 bp
Exons: 3
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00003172; ENST00000420221.1; AC108025.2-002; OTTHUMT00000322565.1; NONHSAT068815
Alternative gene names: XLOC_001958; linc-RNASEH1-2; ENSG00000230090.1; AC108025.2; OTTHUMG00000151425.1; ENSG00000230090.5; ; AC108025.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -270.8987 non-coding 
CPAT coding probability 0.10% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01248:10 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CMPK2-12:9
3.1 lnc-CMPK2-13:9
4.0 LINC01248:10
4.1 LINC01248:10
5.0 LINC01248:10
5.1 LINC01248:10
5.2 LINC01248:10