Transcript: LINC01248:2

Basic information

LNCipedia transcript ID: LINC01248:2 
HGNC Gene Symbol: LINC01248    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1248
Ensembl Gene ID: ENSG00000224128
Ensembl Transcript ID: ENST00000458264
Location (hg19): chr2:5742637-5831620
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 468 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00003170; ENST00000458264.1; AC107057.2-001; OTTHUMT00000322563.1; NONHSAT068805
Alternative gene names: XLOC_001958; linc-RNASEH1-2; ENSG00000224128.1; AC107057.2; OTTHUMG00000151424.1; LINC01248;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -259.5726 non-coding 
CPAT coding probability 1.40% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01248:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CMPK2-12:2
3.1 lnc-CMPK2-13:2
4.0 LINC01248:2
4.1 LINC01248:2
5.0 LINC01248:2
5.1 LINC01248:2
5.2 LINC01248:2