Transcript: LINC01249:7

Basic information

LNCipedia transcript ID: LINC01249:7 
HGNC Gene Symbol: LINC01249    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1249
Ensembl Gene ID: ENSG00000231532
Ensembl Transcript ID: ENST00000432314
Location (hg19): chr2:4677790-4690945
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 627 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00003167; ENST00000432314; ENST00000432314.1; AC022311.1-003; OTTHUMT00000323191.1; NONHSAT068792; ENST00000432314.5
Alternative gene names: XLOC_001956; linc-RNASEH1-5; ENSG00000231532; AC022311.1; ENSG00000231532.1; OTTHUMG00000151581.1; ENSG00000231532.5; LINC01249;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -56.2604 non-coding 
CPAT coding probability 5.14% non-coding 
Bazzini small ORFs 1 coding 
covF1Prop0.131578947
seqAAMPHPASARPWCAHPLTCAHCLALPSEMNPVPQMEMQKSPVFCVAHAGSCRPELFLFGHLGSSTRNDVASIRNLVAMQS
orfFrame6.985092913

In stringent set: no

Locus conservation

Locus conservation?
LINC01249:7 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RNASEH1-4:5
3.1 lnc-RNASEH1-6:5
4.0 LINC01249:7
4.1 LINC01249:7
5.0 LINC01249:7
5.1 LINC01249:7
5.2 LINC01249:7