Transcript: LINC01250:1

Basic information

LNCipedia transcript ID: LINC01250:1 
HGNC Gene Symbol: LINC01250    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1250
Ensembl Gene ID: ENSG00000234423
Ensembl Transcript ID: ENST00000457478
RefSeq ID: NR_110228
Location (hg19): chr2:2898820-3129798
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2344 bp
Exons: 7
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000457478; ENST00000457478.1; AC019118.2-001; OTTHUMT00000322597.1; NONHSAT068693; NR_110228; NR_110228.1
Alternative gene names: ENSG00000234423; AC019118.2; ENSG00000234423.1; OTTHUMG00000151427.1; LINC01250; FLJ37991


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 0.508 non-coding 
CPAT coding probability 4.62% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01250:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TSSC1-2:1
3.1 lnc-TSSC1-2:1
4.0 LINC01250:1
4.1 LINC01250:1
5.0 LINC01250:1
5.1 LINC01250:1
5.2 LINC01250:1