Transcript: LINC01259:2

Basic information

LNCipedia transcript ID: LINC01259:2 
HGNC Gene Symbol: LINC01259    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1259
Ensembl Gene ID: ENSG00000249667
Ensembl Transcript ID: ENST00000507056
Location (hg19): chr4:38511388-38519677
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 757 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00007515; ENST00000507056; ENST00000507056.1; RP11-213G21.1-001; OTTHUMT00000360796.1; NONHSAT096037
Alternative gene names: XLOC_003510; linc-KLF3-3; ENSG00000249667; RP11-213G21.1; ENSG00000249667.1; OTTHUMG00000160486.1; LINC01259; TCONS_00007515


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -169.6695 non-coding 
CPAT coding probability 13.49% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01259:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-KLF3-5:1
3.1 lnc-KLF3-5:1
4.0 LINC01259:2
4.1 LINC01259:2
5.0 LINC01259:2
5.1 LINC01259:2
5.2 LINC01259:2