Transcript: LINC01277:1

Basic information

LNCipedia transcript ID: LINC01277:1 
LNCipedia gene ID: LINC01277
Location (hg19): chr6:143329254-143400412
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1900 bp
Exons: 3
Sources: NONCODE v4; Nielsen et al.,2014
Alternative transcript names: NONHSAT115331; ucscGeneNc_uc003qje_1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -2.0842 non-coding 
CPAT coding probability 0.72% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01277:1 yes no no no

Available literature

  1. Hou (2014), Long noncoding RNAs expression patterns associated with chemo response to cisplatin based chemotherapy in lung squamous cell carcinoma patients., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HIVEP2-2:3
4.0 LINC01277:1
4.1 LINC01277:1
5.0 LINC01277:1
5.1 LINC01277:1
5.2 LINC01277:1