Transcript: LINC01285:2

Basic information

LNCipedia transcript ID: LINC01285:2 
LNCipedia gene ID: LINC01285
Location (hg19): chrX:117973519-117991849
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2290 bp
Exons: 7
Sources: Biogazelle lncRNA chip; Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000412422; TCONS_00017008; ENST00000412422.1; RP4-562J12.2-001; OTTHUMT00000058013.1; NONHSAT138303
Alternative gene names: ENSG00000203650; XLOC_008051; linc-LONRF3; RP4-562J12.2; ENSG00000203650.2; OTTHUMG00000022260.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -15.8631 non-coding 
CPAT coding probability 21.93% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01285:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ZCCHC12-1:1
3.1 lnc-ZCCHC12-1:1
4.0 LINC01285:2
4.1 LINC01285:2
5.0 LINC01285:2
5.1 LINC01285:2
5.2 LINC01285:2