Transcript: LINC01298:3

Basic information

LNCipedia transcript ID: LINC01298:3 
HGNC Gene Symbol: LINC01298    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1298
Ensembl Gene ID: ENSG00000253351
Ensembl Transcript ID: ENST00000523171
RefSeq ID: NR_046232
Location (hg19): chr8:96219235-96228602
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 519 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000523171; ENST00000523171.1; KB-1047C11.1-001; OTTHUMT00000379671.1; NONHSAT127826; NR_046232; NR_046232.1
Alternative gene names: ENSG00000253351; KB-1047C11.1; ENSG00000253351.1; OTTHUMG00000164662.1; LINC01298;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -193.8338 non-coding 
CPAT coding probability 6.46% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01298:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C8orf37-1:2
3.1 lnc-C8orf37-1:2
4.0 LINC01298:3
4.1 LINC01298:3
5.0 LINC01298:3
5.1 LINC01298:3
5.2 LINC01298:3